Evolutionary History of the Main Biological Characters of Siphonophores
Alejandro Damian Serrano
2/11/2017
The Tree:
Siphonohores…
Stochastic mapping plots
## make.simmap is sampling character histories conditioned on the transition matrix
##
## Q =
## Dioeicous Monoeicous
## Dioeicous -0.1793516 0.1793516
## Monoeicous 0.1793516 -0.1793516
## (estimated using likelihood);
## and (mean) root node prior probabilities
## pi =
## Dioeicous Monoeicous
## 0.5 0.5## make.simmap is sampling character histories conditioned on the transition matrix
##
## Q =
## 0 1
## 0 -0.1735485 0.1735485
## 1 0.1735485 -0.1735485
## (estimated using likelihood);
## and (mean) root node prior probabilities
## pi =
## 0 1
## 0.5 0.5## make.simmap is sampling character histories conditioned on the transition matrix
##
## Q =
## 0 1
## 0 -0.177055 0.177055
## 1 0.177055 -0.177055
## (estimated using likelihood);
## and (mean) root node prior probabilities
## pi =
## 0 1
## 0.5 0.5## make.simmap is sampling character histories conditioned on the transition matrix
##
## Q =
## 0 1
## 0 -0.08597037 0.08597037
## 1 0.08597037 -0.08597037
## (estimated using likelihood);
## and (mean) root node prior probabilities
## pi =
## 0 1
## 0.5 0.5## make.simmap is sampling character histories conditioned on the transition matrix
##
## Q =
## Dorsal None Ventral
## Dorsal -0.1002369 0.00000000 0.10023688
## None 0.0000000 -0.09068517 0.09068517
## Ventral 0.1002369 0.09068517 -0.19092205
## (estimated using likelihood);
## and (mean) root node prior probabilities
## pi =
## Dorsal None Ventral
## 0.3333333 0.3333333 0.3333333## make.simmap is sampling character histories conditioned on the transition matrix
##
## Q =
## Multiple of one type None Two of one type
## Multiple of one type -0.3263304 0.1120797 0.2142507
## None 0.1120797 -0.1120797 0.0000000
## Two of one type 0.2142507 0.0000000 -0.8536830
## Two of two types 0.0000000 0.0000000 0.6394323
## Two of two types
## Multiple of one type 0.0000000
## None 0.0000000
## Two of one type 0.6394323
## Two of two types -0.6394323
## (estimated using likelihood);
## and (mean) root node prior probabilities
## pi =
## Multiple of one type None Two of one type
## 0.25 0.25 0.25
## Two of two types
## 0.25## make.simmap is sampling character histories conditioned on the transition matrix
##
## Q =
## 0 1
## 0 -0.08179357 0.08179357
## 1 0.08179357 -0.08179357
## (estimated using likelihood);
## and (mean) root node prior probabilities
## pi =
## 0 1
## 0.5 0.5## make.simmap is sampling character histories conditioned on the transition matrix
##
## Q =
## 0 1 2 4
## 0 -0.1873257 0.1873257 0.0000000 0.000000
## 1 0.1873257 -0.4879180 0.3005923 0.000000
## 2 0.0000000 0.3005923 -3.6251484 3.324556
## 4 0.0000000 0.0000000 3.3245561 -3.324556
## (estimated using likelihood);
## and (mean) root node prior probabilities
## pi =
## 0 1 2 4
## 0.25 0.25 0.25 0.25## make.simmap is sampling character histories conditioned on the transition matrix
##
## Q =
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## Bathypelagic -0.7888097 0.4560825 0.0000000 0.3327272 0.0000000
## Deep benthic 0.4560825 -0.4560825 0.0000000 0.0000000 0.0000000
## Epipelagic 0.0000000 0.0000000 -1.6539459 0.7557412 0.8982047
## Mesopelagic 0.3327272 0.0000000 0.7557412 -1.0884683 0.0000000
## Surface 0.0000000 0.0000000 0.8982047 0.0000000 -0.8982047
## (estimated using likelihood);
## and (mean) root node prior probabilities
## pi =
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## 0.2 0.2 0.2 0.2 0.2When we reconstruct the evolutionary history of sex distribution in siphonophore species, we obtain the following results:
make.simmap(ultratree, sex, nsim = 100)## make.simmap is sampling character histories conditioned on the transition matrix
##
## Q =
## Dioeicous Monoeicous
## Dioeicous -0.1793516 0.1793516
## Monoeicous 0.1793516 -0.1793516
## (estimated using likelihood);
## and (mean) root node prior probabilities
## pi =
## Dioeicous Monoeicous
## 0.5 0.5## Done.## 100 phylogenetic trees with mapped discrete charactersSex distribution:
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## Dioeicous Monoeicous
## "black" "red"
Presence of palpons:
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Presence of tentilla:
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## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
Presence of Nectophores:
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
Position of Nectosome:
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
## no colors provided. using the following legend:
## Dorsal None Ventral
## "black" "red" "green3"
Nectophore number and types:
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
## no colors provided. using the following legend:
## Multiple of one type None Two of one type
## "black" "red" "green3"
## Two of two types
## "blue"
Presence of Pneumatophore:
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
## no colors provided. using the following legend:
## 0 1
## "black" "red"
Number of Bract types:
#Simmap bract-types
plotTree(ultratree, lwd = 4)
bracts_sim %>% plotSimmap(lwd = 4, add = T)## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"
## no colors provided. using the following legend:
## 0 1 2 4
## "black" "red" "green3" "blue"colors = c("black", "red", "green3", "blue")
names(colors) = c("No bracts", "1", "2", "4")
nodelabels(pie=(describe.simmap(bracts_sim, plot=F)$ace) ,piecol=colors,cex=0.35)
add.simmap.legend(colors = colors, x=0.6*par()$usr[1],y=0.3*par()$usr[4],prompt=FALSE)
Ocean Depth Zones:
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
## no colors provided. using the following legend:
## Bathypelagic Deep benthic Epipelagic Mesopelagic Surface
## "black" "red" "green3" "blue" "cyan"
Continuous traits: Brownian motion reconstructions
Median depth reconstruction:
Bathymetrics phylomorphospace
Abundance of each taxon in the Monterey Bay sampling site
Uncertainty inclusive traitgram for depth range
Bathymetrics scattergram array
## Computing multidimensional phylogenetic scatterplot matrix...
Distribution of sex across siphonophore taxa
Overview of main binary traits
Phylogenetic signal in the character data
Agnostic branch length tree generation
flat_tree = tree
flat_tree$edge.length = rep(mean(flat_tree$edge.length), length(flat_tree$edge.length))Phylogenetic signal in bract number
phylosignal(bracts, ultratree)## K PIC.variance.obs PIC.variance.rnd.mean PIC.variance.P
## 1 0.8613105 0.9125646 1.472304 0.023
## PIC.variance.Z
## 1 -1.187893physignal(bracts, ultratree)##
|
| | 0%
|
| | 1%
|
|= | 1%
|
|= | 2%
|
|== | 2%
|
|== | 3%
|
|== | 4%
|
|=== | 4%
|
|=== | 5%
|
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|=================================================================| 100%##
## Call:
## physignal(A = bracts, phy = ultratree)
##
##
##
## Observed Phylogenetic Signal (K): 0.8613
##
## P-value: 0.045
##
## Based on 1000 random permutationsPhylogenetic signal in Nectosome, Palpons, Tentilla, and Pneumetophore
## K PIC.variance.obs PIC.variance.rnd.mean
## Nectosome 3.965198 0.03910808 0.1985638
## Palpons 3.114442 0.11036920 0.6811621
## Tentilla 2.654816 0.07987194 0.3561513
## Pneumatophore 3.473777 0.08726089 0.5991785
## PIC.variance.P PIC.variance.Z
## Nectosome 0.0035 -2.450670
## Palpons 0.0010 -4.556984
## Tentilla 0.0010 -3.220126
## Pneumatophore 0.0010 -4.345324Phylogenetic signal in VARS bathymetrics
##
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## Call:
## physignal(A = dpruned_data[, c(13, 14, 15, 17, 18)], phy = dpruned_tree)
##
##
##
##
## Observed Phylogenetic Signal (K): 0.7039
##
## P-value: 0.047
##
## Based on 1000 random permutations##
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|=================================================================| 100%##
## Call:
## physignal(A = depth_range, phy = dpruned_tree)
##
##
##
## Observed Phylogenetic Signal (K): 0.7504
##
## P-value: 0.049
##
## Based on 1000 random permutations## K PIC.variance.obs PIC.variance.rnd.mean
## Depth.Median 0.7119254 785189.2 1142302.7
## Depth.Mean 0.6827270 896854.5 1238048.5
## Depth.StdDev 0.5649574 145636.6 161094.2
## Depth.Max 0.6888667 3252100.6 4310452.4
## Depth.Min 0.8189561 711003.2 1169181.0
## PIC.variance.P PIC.variance.Z
## Depth.Median 0.089 -0.9532110
## Depth.Mean 0.102 -0.9049216
## Depth.StdDev 0.321 -0.4626376
## Depth.Max 0.096 -1.2230483
## Depth.Min 0.065 -1.0056433Phylogenetic PCA for bathymetrics
Phylogenetic ANOVA for depth
Each phylogenetic ANOVA compares variance of depth (continuous variable) within and between groups clustered by their categorical biological traits.
## Warning: no labels for x. Assuming order of tree$tip.label.
##
## Warning: no labels for y. Assuming order of tree$tip.label.## $F
## [1] 0.8801907
##
## $Pf
## [1] 0.648
##
## $T
## Dorsal None Ventral
## Dorsal 0.0000000 -0.4051855 -1.2074648
## None 0.4051855 0.0000000 -0.6624153
## Ventral 1.2074648 0.6624153 0.0000000
##
## $method
## [1] "holm"
##
## $Pt
## Dorsal None Ventral
## Dorsal 1.000 1 0.939
## None 1.000 1 1.000
## Ventral 0.939 1 1.000## Warning: no labels for x. Assuming order of tree$tip.label.
##
## Warning: no labels for y. Assuming order of tree$tip.label.## $F
## [1] 7.337818
##
## $Pf
## [1] 0.132
##
## $T
## Dioeicous Monoeicous
## Dioeicous 0.000000 2.708841
## Monoeicous -2.708841 0.000000
##
## $method
## [1] "holm"
##
## $Pt
## Dioeicous Monoeicous
## Dioeicous 1.000 0.132
## Monoeicous 0.132 1.000## Warning: no labels for x. Assuming order of tree$tip.label.
##
## Warning: no labels for y. Assuming order of tree$tip.label.## $F
## [1] 0.2959558
##
## $Pf
## [1] 0.742
##
## $T
## 0 1
## 0 0.0000000 -0.5440182
## 1 0.5440182 0.0000000
##
## $method
## [1] "holm"
##
## $Pt
## 0 1
## 0 1.000 0.742
## 1 0.742 1.000## Warning: no labels for x. Assuming order of tree$tip.label.
##
## Warning: no labels for y. Assuming order of tree$tip.label.## $F
## [1] 0.2060374
##
## $Pf
## [1] 0.967
##
## $T
## Multiple of one type None Two of one type
## Multiple of one type 0.0000000 0.6089965 0.5355092
## None -0.6089965 0.0000000 -0.1312674
## Two of one type -0.5355092 0.1312674 0.0000000
## Two of two types -0.3110835 0.2234348 0.1134931
## Two of two types
## Multiple of one type 0.3110835
## None -0.2234348
## Two of one type -0.1134931
## Two of two types 0.0000000
##
## $method
## [1] "holm"
##
## $Pt
## Multiple of one type None Two of one type
## Multiple of one type 1 1 1
## None 1 1 1
## Two of one type 1 1 1
## Two of two types 1 1 1
## Two of two types
## Multiple of one type 1
## None 1
## Two of one type 1
## Two of two types 1## Warning: no labels for x. Assuming order of tree$tip.label.
##
## Warning: no labels for y. Assuming order of tree$tip.label.## $F
## [1] 0.02459673
##
## $Pf
## [1] 0.919
##
## $T
## 0 1
## 0 0.0000000 0.1568334
## 1 -0.1568334 0.0000000
##
## $method
## [1] "holm"
##
## $Pt
## 0 1
## 0 1.000 0.919
## 1 0.919 1.000## Warning: no labels for x. Assuming order of tree$tip.label.
##
## Warning: no labels for y. Assuming order of tree$tip.label.## $F
## [1] 0.2524332
##
## $Pf
## [1] 0.793
##
## $T
## 0 1
## 0 0.0000000 -0.5024273
## 1 0.5024273 0.0000000
##
## $method
## [1] "holm"
##
## $Pt
## 0 1
## 0 1.000 0.793
## 1 0.793 1.000## Warning: no labels for x. Assuming order of tree$tip.label.
##
## Warning: no labels for y. Assuming order of tree$tip.label.## $F
## [1] 0.2538955
##
## $Pf
## [1] 0.773
##
## $T
## 0 1
## 0 0.0000000 -0.5038804
## 1 0.5038804 0.0000000
##
## $method
## [1] "holm"
##
## $Pt
## 0 1
## 0 1.000 0.773
## 1 0.773 1.000